Michael Brenowitz

Department of Biochemistry, Albert Einstein College of Medicine

Affiliated withAlbert Einstein College of Medicine

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 4	2011

Other Publications

Article	Year
Productive folding to the native state by a group II intron ribozyme. Journal of molecular biology\| PubMed ID: 11786013	2002
Concerted binding and bending of DNA by Escherichia coli integration host factor. Journal of molecular biology\| PubMed ID: 11827473	2002
Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme. Biochemistry\| PubMed ID: 11980483	2002
Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP). Biochemistry\| PubMed ID: 12135378	2002
Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme. Nature structural biology\| PubMed ID: 12434149	2002
Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting". Current opinion in structural biology\| PubMed ID: 12464318	2002
Solution structure and interdomain interactions of the Saccharomyces cerevisiae "TATA binding protein" (TBP) probed by radiolytic protein footprinting. Biochemistry\| PubMed ID: 12667055	2003
Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme. Journal of molecular biology\| PubMed ID: 12691754	2003
An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme. Journal of molecular biology\| PubMed ID: 14636593	2003
Quaternary solution structures of galectins-1, -3, and -7. Glycobiology\| PubMed ID: 14693909	2004
Comparison of the effect of water release on the interaction of the Saccharomyces cerevisiae TATA binding protein (TBP) with "TATA Box" sequences composed of adenosine or inosine. Biophysical journal\| PubMed ID: 14695279	2004
Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions. Nucleic acids research\| PubMed ID: 15319447	2004
Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme. Journal of molecular biology\| PubMed ID: 15364572	2004
Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations. Journal of molecular biology\| PubMed ID: 15491606	2004
Catching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15781859	2005
Overproduction of alpha chains provides a proton-insensitive component to the bluefish hemoglobin system. The Journal of biological chemistry\| PubMed ID: 16166086	2005
Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure. Journal of molecular biology\| PubMed ID: 16242711	2005
Concordant exploration of the kinetics of RNA folding from global and local perspectives. Journal of molecular biology\| PubMed ID: 16303138	2006
Indirect readout of DNA sequence by papillomavirus E2 proteins depends upon net cation uptake. Journal of molecular biology\| PubMed ID: 16513133	2006
Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA. The EMBO journal\| PubMed ID: 16541100	2006
Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule. Journal of molecular biology\| PubMed ID: 16574145	2006
Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins. Nucleic acids research\| PubMed ID: 16582097	2006
Following the dynamics of changes in solvent accessibility of 16 S and 23 S rRNA during ribosomal subunit association using synchrotron-generated hydroxyl radicals. Journal of molecular biology\| PubMed ID: 16725154	2006
Influence of intramolecular cross-links on the molecular, structural and functional properties of PEGylated haemoglobin. The Biochemical journal\| PubMed ID: 17049048	2007
Binding then bending: a mechanism for wrapping DNA. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17159146	2006
Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding protein. Biochemistry\| PubMed ID: 17378582	2007
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17438287	2007
DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein. Biochemistry\| PubMed ID: 17683121	2007
Following molecular transitions with single residue spatial and millisecond time resolution. Methods in cell biology\| PubMed ID: 17964944	2008
Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18040044	2007
Evolution of GITRL immune function: murine GITRL exhibits unique structural and biochemical properties within the TNF superfamily. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18182486	2008
Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting. Nature protocols\| PubMed ID: 18274531	2008
Hinge stiffness is a barrier to RNA folding. Journal of molecular biology\| PubMed ID: 18471829	2008
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis. Nucleic acids research\| PubMed ID: 18477638	2008
Function and structural organization of Mot1 bound to a natural target promoter. The Journal of biological chemistry\| PubMed ID: 18606810	2008
Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments. Nature protocols\| PubMed ID: 18772866	2008
Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs. Current opinion in chemical biology\| PubMed ID: 18926923	2008
Solution structure and refolding of the Mycobacterium tuberculosis pentapeptide repeat protein MfpA. The Journal of biological chemistry\| PubMed ID: 18977756	2008
PEGylation of Val-1(alpha) destabilizes the tetrameric structure of hemoglobin. Biochemistry\| PubMed ID: 19119852	2009
Evolutionary and biophysical relationships among the papillomavirus E2 proteins. Frontiers in bioscience : a journal and virtual library\| PubMed ID: 19273107	2009
Complementing global measures of RNA folding with local reports of backbone solvent accessibility by time resolved hydroxyl radical footprinting. Methods (San Diego, Calif.)\| PubMed ID: 19426806	2009
Biochemical and structural characterization of the human TL1A ectodomain. Biochemistry\| PubMed ID: 19522538	2009
Conformational states of human purine nucleoside phosphorylase at rest, at work, and with transition state analogues. Biochemistry\| PubMed ID: 20108972	2010
Phenothiazines inhibit S100A4 function by inducing protein oligomerization. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20421509	2010
Decoy strategies: the structure of TL1A:DcR3 complex. Structure (London, England : 1993)\| PubMed ID: 21300286	2011
Stability, denaturation and refolding of Mycobacterium tuberculosis MfpA, a DNA mimicking protein that confers antibiotic resistance. Biophysical chemistry\| PubMed ID: 21605934	2011
RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. RNA (New York, N.Y.)\| PubMed ID: 21712400	2011
Introduction: twenty five years of the Gibbs Conference on Biothermodynamics. Biophysical chemistry\| PubMed ID: 21840113	2011
A microfluidic device that generates hydroxyl radicals to probe the solvent accessible surface of nucleic acids. Lab on a chip\| PubMed ID: 21863183	2011
Entropy-driven binding of picomolar transition state analogue inhibitors to human 5'-methylthioadenosine phosphorylase. Biochemistry\| PubMed ID: 21985704	2011
Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & development\| PubMed ID: 22215810	2012